PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC14337_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 376aa    MW: 42085.3 Da    PI: 9.5224
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC14337_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.42.9e-06628123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ C+k F+r  nL+ H r H
  RrC14337_p1  6 FICEVCNKGFKRDQNLQLHRRGH 28
                 89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.09E-8528No hitNo description
Gene3DG3DSA:3.30.160.602.7E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121711.6E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.887628IPR007087Zinc finger, C2H2
SMARTSM003550.013628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551104878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-471104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.09E-878103No hitNo description
SMARTSM0035520083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MATNRFICEV CNKGFKRDQN LQLHRRGHNL PCKLKQRTNK EQVKKKVYIC PEKTCVHYDP  60
ARALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVMSDWKA HSKICGTREY RCDCGTLFSR  120
KDSFITHRAF CDALAEKSAR CASVPPATAS YLNNAPEAEV NIRNVKANHQ QPSLNIDHYN  180
IDGFMGVSFT NQLPLPANVF ASSSSPSPRK ASDSLQNLWH GQSSHQWLLN ENNNINILQR  240
GISNNQEDHD TKKGISNGYL LSSDARTNYD QNDGQVISSM SATALLQKAA QMGSKTSSSS  300
SNNCTAFGLV TSSTFNSKHT ENDIKTKEVD ERGFTRDFLG VGNQNRPWPL LMVNHNLPNM  360
TQPVTTDGTP IADMNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150182.10.0PREDICTED: zinc finger protein JACKDAW-like isoform X2
SwissprotQ944L30.0IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLM4EYE80.0M4EYE8_BRARP; Uncharacterized protein
STRINGBra033840.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-164C2H2-like zinc finger protein